barisgenc12

1- QSI prep version is QSIPrep 0.14.3 2- my data set is valid. 3- Log folder contains only citation.html. I couldn't find log file.

Node: qsiprep_wf.single_subject_01_wf.dwi_preproc_wf.hmc_sdc_wf.gather_inputs Working directory: /tmp/work/qsiprep_wf/single_subject_01_wf/dwi_preproc_wf/hmc_sdc_wf/gather_inputs Node inputs: b0_threshold = 100 bval_file = bvec_file = dwi_file = epi_fmaps = original_files = topup_max_b0s_per_spec = 3 topup_requested = False Traceback (most recent call...

hello smeisler. I solved the problem with the command export PATH=/Users/baris/Library/Python/3.8/bin:$PATH. Thank you very much for your help

hi. i'm sorry for late answer. my directory setted up correctly. ANTS0GenericAffine.mat b0_d_lin_atlas_2_5.nii.gz epi_reg_d_ANTS.txt ANTS1InverseWarp.nii.gz b0_d_nonlin_atlas_2_5.nii.gz epi_reg_d.mat ANTS1Warp.nii.gz b0_d_smooth.nii.gz T1_mask.nii.gz All my output directory. But there is not b0_all and...

my input directory is "acqparams.txt bvals.txt dti.nii.gz outputs b0.nii.gz bvecs.txt inputs T1.nii.gz"