Baoxing Song

split database for the storage random access limitation problem

3

Dear hh-suite developers, Thanks for creating such a wonderful tool. We are trying to align 750,000 proteins sequences using hhblits on a compute cluster. However, we are having the storage...

GenotypeGVCFs is reporting Buffer overflow errors

2

### Affected tool(s) or class(es) GenotypeGVCFs is reporting: ``` [TileDB::ArrayIterator] Error: Cannot advance iterator; Buffer overflow. terminate called after throwing an instance of 'VariantStorageManagerException' what(): VariantStorageManagerException exception : VariantArrayCellIterator increment...

mavx512bw flag

1

Dear friends, I am having a function implemented using the avx512, avx2, sse4_1 and sse2, four versions in total using cpp. I am trying to identify if the "avx512bw", "avx2",...

taking dna/CDS sequence as input

9

Hi David, I tested OrthoFinder on several well-assembled species, it works very well. Now I am working on several species with genome sequence being assembled using only nanopore reads. There...

Dear Heng, Looks like those four ez values ``` int mqe, mqe_t; // max score when reaching the end of query int mte, mte_q; // max score when reaching the...