Baoxing Song

Hi, Rafael, I am not sure how large is the specific region. If it is small (say less than 200Kb), you could run `anchorwave ali -w 200000`. If it is...

Hi so sorry for the delayed reply, How was it going, please? I guess it has been finished?

Thanks for trying AnchorWanve. Could you provide enough information, so that I could repeat this error, please? Including input data, every command, minimap2 version, etc.

Yes. I have such a plan for a faster version. I will have a hackathon for this aim next week.

Version V1.1.1 should be significantly faster than V1.0.1. We are testing a new version which is about 1.6 times faster than Version V1.1.1 under the multiple threads model.

Thanks. This is a good suggestion. I will try to implement this feature.

1. Which version of AnchorWave are you using, please? 2. Where did not get the file "MAIZE_B73.fa", is that V4? 3. Could you delete "MAIZE_DK105_MAIZE_B73.anchorspro ", rerun and then share...

Hi, thanks for trying AnchorWave. Looks like AnchorWave does not parse the two sam files correctly. Would you like to try again from the very beginning? Or could you share...