baohongz

Yes. It is still the case.

$ pip install diffxpy (test) [bzhang1@omicsoft01 app]$ pip show diffxpy Name: diffxpy Version: 0.7.4 Summary: Fast and scalable differential expression analysis on single-cell RNA-seq data Home-page: UNKNOWN Author: David S....

Links please!

Lisa, Can you use cellxgene VIP to show one UMAP in VIP window and the other in the main window? You can hide input and minimize the menu to make...

We developed [cellxgene VIP (Visualization in Plugin)](https://github.com/interactivereport/cellxgene_VIP) to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format....

Is this piece of code incorporated into cellxgene source code?

You can use cellxgene VIP to view spatial transcriptomics data. Please follow this example to generate h5ad file for your data, https://github.com/interactivereport/cellxgene_VIP/blob/master/notebook/spatial_transcriptomics.ipynb You could merge data from multiple slices together....

In the latest cellxgene VIP,  Figure 3 | Advanced features of visualizing and processing of spatial transcriptomics data accessed by “Spatial transcriptomics”...