banderoz

How to run SortMeRNA (v4.3.4) with multiple reference files correctly?

3

We have been executing SortMeRNA **v2.1** with multiple reference files this way: `sortmerna --ref /tmp/sortmerna/rRNA_databases/rfam-5.8s-database-id98.fasta,/tmp/sortmerna/index/rfam-5.8s-db:/tmp/sortmerna/rRNA_databases/silva-arc-23s-id98.fasta,/tmp/sortmerna/silva-arc-23s-db -a 8 --fastx --log --reads /tmp/unpaired.fastq --aligned /tmp/unp.rRNAs --other /tmp/unp.no_rRNAs` and it works perfectly. Now...