babarlelephant

Same problem here with a small alignment and dimension = 50 and the solution https://github.com/beast-dev/beast-mcmc/issues/1030#issuecomment-497359850 above worked, the skygrid.logpopsize1 (beast 1.10.4 and 1.10.5) is now updated by the MCMC whereas...

@MoiraZuber Hi, can you check the 16 February Kuwait/KU008/2020 sequence ? There are several hints that it is instead from 16 March https://github.com/nextstrain/ncov/commit/2873976234ebab934df9b04a525fbd781d03df0b https://www.kuna.net.kw/ArticleDetails.aspx?id=2860593&language=en

@sebdart Hi, I am stuck at a much smaller number of sequences than you do, but I found [there](https://github.com/roblanf/sarscov2phylo/blob/master/tree_estimation.md) that iqtree2 has a very fast algorithm to add many sequences...

Might help to see the fasta?