Baptiste Grimaud

Results 67 comments of Baptiste Grimaud

@alejoe91 Thank you for the answer ! @samuelgarcia I opened the same file with the two different readers : `recording = read_biocam(data_path)` from SI and `Probe = BioCam(data_path)` from HS,...

> maybe it is a geometry issue in probeinterface. Seems to be ! I had to remove `with_contact_ids=True` as it was considered an unexpected argument, it seems it is not...

> @BptGrm are you in touch with 3Brain? Could you reach out and ask for assistance? I am, I'll ask them about it ! The intermediate solution I've found so...

> But then you won't have the recording object available, which is needed for waveforms, locations, etc.. That is true, but HerdingSpikes itself can handle at least some of it,...

> How did you instantiate the `HSDetection` from a spikeinterface object? Did you use the [this class](https://github.com/mhhennig/HS2/blob/master/herdingspikes/probe.py#L260)? I did, I forgot to mention it in the first post. Could that...

I dug a bit deeper, and it seems that using `RecordingExtractor` from HS is indeed causing troubles. The default parameters for `inner_radius`, `neighbor_radius` and `masked_channels` are different, and even when...

@alejoe91 Thanks for the help ! There are also a few runtime warnings I get when using HS through a regular SI pipeline, but I don't know if those are...

So, the dirty way to fix this was to point directly to an environment install of CUDA, as CUDA_PATH otherwise points to the regular Windows install. I don't know if...

That did the trick ! I added `C:\Users\_user_\anaconda3\envs\_myenv_\Lib\x64` to the (USER, not SYSTEM) PATH variable. The solver now works on some problems, but crashes on others : ``` =============================================================================== CVXPY...

Sure ! The script itself involves several modules, but the actual problem solving part is as follows : ``` def acceleration_minimization_norm1(measure, sigma0,px, nn = 0): """ Parameters ---------- measure :...