Azat Badretdin

installation seem to be stuck

3

I installed all prerequisites to Roary and now I am strying to install the product itself. It seems to be stuck: ``` $ conda install roary Collecting package metadata (current_repodata.json):...

regression of cwltool performance by 5-7 minutes around 1st of june

9

Our PGAPX tool (ncbi/pgap on GitHub) uses cwltool as a CWL runner. We noticed that around 1st of June this year or TeamCity builds are running 5-7 minutes longer. We...

duplicate and close variants of the same alignment in the output

4

When I use these parameters: ``` ./miniprot -G 100 -O 10 -J 34 -F 30 --gff -ut32 nucleotide.fasta proteins.fasta ``` I get very close variants of the same alignment: ```...

failure to reproduce Completeness data from Supplementary Table 6

2

We are trying to test our local installation of checkm2 by reproducing Completeness data for assemblies listed in Supplementary Table 6 from the preprint: https://www.biorxiv.org/content/10.1101/2022.07.11.499243v1.supplementary-material We tried to use nucleotide...