Xi He Xie

Hi, I could potentially be running into a similar problem with minify, I am running the following command, first activate a conda environment, then run a python code that uses...

I'm running into the same error in singularity image with `freesurfer-6.0.0-min`, the image was created with neurodocker 0.7.0: ``` Iteration 1 Mon May 25 13:52:03 PDT 2020 nu_correct -clobber ./tmp.mri_nu_correct.mni.67113/nu0.mnc...

I think I found the problem... I used the same neurodocker to generate both singularity and docker recipe files. In the singularity image, `echo $PATH` returns: ``` /opt/miniconda-latest/envs/tracts/bin:/opt/miniconda-latest/condabin:/opt/miniconda-latest/bin:/opt/freesurfer-6.0.0-min/bin:/opt/fsl-6.0.1/bin:/opt/ants-2.3.1:/opt/mrtrix3-3.0.0/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ``` whereas...

i can confirm that using `singularity -e` (flag for a clean environnment upon container start) has been my default singularity usage lately (since 3.6 update). I had also removed freesurfer...

Hi, I am running into the same error when using `mpiexec` for a parallel sampling script with `schwimmbad`'s `MultiPool` or when I try to do `mpirun python sampling_script.py` with `multiprocessing`'s...

@dfm thank you for pointing this out, I totally missed it... I edited my code accordingly and it turns out its just not waiting for the master process to finish,...

Hey, So I am running into problems with these run_bionet.py files in both my docker image and my git clone installs. (Tried both to see if the problem persists) Basically...