Adelme Bazin

Oliver will fix this in the next Bakta version ! So I'm closing this again. In the meantime, if it happens to someone, the best current solution is to remove...

The new release of Bakta v1.8.0 fixed the problem! That should not happen anymore. If it still does while using bakta please upgrade to the latest version and it should...

When I warned the COG team about the previous family, they said they'd fix it. I warned them again about this one. Hopefully the next COG release will fix this...

Clearly understandable! Thank you for looking into it anyway Hopefully they'll release soon and it'll be fixed. In the meantime, we'll have to filter out the weird stuff.

Hi, I just met this exact problem for a bacterial assembly, with illumina reads only, but for a much longer sequence of about 110kb. It is present in every single...

Hi After some testing I managed something that looks like your error... accidently. For me, it was actually unrelated to ppanggolin directly but linked to a lack of permission to...

Hi, I can confirm indeed this is what is done here. Taking into account genes identified as fragments differently if they align on different parts of the "complete" genes could...

Indeed, for the description. And actually the 2nd function that you pointed should probably be used instead of the code in use currently in writeMSA. And indeed the default value...

Hi, Indeed, I see where and when this change happened and I'm not 100% sure the change was voluntary, I will verify that. In the meantime, there is no "easy"...

Hi, The "projection" documentation about its output files is here: https://ppanggolin.readthedocs.io/en/latest/user/projection.html#output-files However, indeed it is right that the current behavior is not the one that was intended. I see where...