Adelme Bazin

Hi, My apologies for the delayed response, I messed up my github config and was not receiving notifications anymore. It is currently impossible to view the results of the clustering,...

Alright I see ! I guess it is something that could be added in the futur. What is done in this is basically compute jaccard similarities between vectors of presence...

Hi, Sorry for the delayed response I lacked internet access for a few days. I'm moderately confused by the fasta files that you have included in the .zip, some are...

Hi, What are you trying to achieve through this comparison, exactly? Is it for example to compare the gene families and their partitions between both pangenomes, and know which family...

We do not have something that directly implements a straightforward comparison between two pangenomes (for now), however you can get that with some file comparisons. Assuming you have the latest...

Yes absolutely, you are correct for all of your points. If you want you can play with the filters available with `ppanggolin fasta`, which can make things simpler for your...

Hi, Indeed there is always a status check before any operation, to know what analysis steps were conducted, and to eventually raise an error if something unexpected happened along the...

Alright, indeed you are correct thank you for the hint, this was tricky, but I found the reason. Before this new conda environment update, I believe your were using a...

if you re-install the 80-partitioning branch, everything should work as it did. The ICL not displaying shell partitions is fixed in that branch. We'll try to get all the branches...

Hi, @jpjarnoux will likely be more helpful than me on this one but he's away this week. I have not used this method a lot myself. I think you have...