Asuman

Hi, I cannot run the program with a fasta alignment file, should I only use maf format? Also, if I use publicly available https://hgdownload.soe.ucsc.edu/goldenPath/hg38/multiz100way/maf/chr1_KI270707v1_random.maf.gz as ```maf``` and run ```phylocsf++ build-tracks...

Stringtie tmp folder is not deleted

4

Hi, It is my first time with Stringtie v.1.3.4. Program has finished with no error. But in the gtf output folder a tmp folder still remains. Is that a problem...

Gene IDs after updated prepDE.py

1

Hi, I am having trouble with geneIDs in gene_count_matrix file. I will give an example: This transcript MSTRG.43175 found twice in the matrix. And they do not have the same...