astrophys
astrophys
A colleague is working on using plasflow to analyze on all contigs >1000 bp in her dataset. After filtering using `filter_sequences_by_length.pl`, she has a total of 2,964,210 contigs. We are...
I am trying to install this software on CentOS 8.1 using pip from within a virtual environment. I had previously tried installing it using `conda` but after 3h, it failed...
Hello, I installed [julia](https://julialang.org/downloads/) for Red Hat 8.4 Linux. When I tried running Whippet, e.g. `whippet-index.jl --fasta /reference/homo_sapiens/GRCh38/ensembl/release-96/Sequence/WholeGenomeFasta/Homo_sapiens.GRCh38.dna.primary_assembly.fa --gtf /export/apps/opt/Whippet/1.6.1/anno/refseq_hg19.flat.gz` I got multiple errors complaining about missing Julia packages. In...
I'm trying to install higlass-server on a Red Hat 8 system. Steps : 1. I cloned the most recent version of this repo (e.g. cbfe79fe) 2. Installed Miniconda 3. Sourced...
Pip no longer supports Python-2 because Python-2 was deprecated 01/01/2020. Biopython is only available for Python-3 (at least via `pip`). It appears that your code does not support Python-3 (e.g....
Hello, According to the Installation documentation (README.md), this requires Python 2.7.9, but according to setup.py it is Python 3.4. What versions of Python is this software compatible with? Thanks!