Mara

Results 17 comments of Mara

Ok, after lots of digging, it appears that Bio::DB::Das::Chado::Segment in the `sub features` subroutine, uses the following query to identify distinct sequences: ```perl my $select_part = "select distinct f.name,fl.fmin,fl.fmax,fl.strand,fl.phase," ."fl.locgroup,fl.srcfeature_id,f.type_id,f.uniquename,"...

For reference: http://cpansearch.perl.org/src/SCAIN/Bio-DB-Das-Chado-0.35a/lib/Bio/DB/Das/Chado/Segment.pm

The relevant call to Bio::DB::Das::Chado::Segment https://github.com/GMOD/jbrowse/blob/dd5e7a9e65b9cff9920d1857c677ecf89b009150/src/perl5/Bio/JBrowse/Cmd/BioDBToJson.pm#L106-L107

A possible solution may be to filter out duplicate features present in `$db_stream` in Bio::JBrowse::Cmd::BioDbToJson. This should probably be controlled by a config option specific to each track.

This is occurring when a single feature has multiple analysis values. There is only one feature, so the physical location (and feature_id) is identical in the database. The bug is...

This is because the log method adds messages to an associated command. At present, if you call log without a command, there is no sensible place to record the message....

There is already a function that implements a listener for the browser's paste event: https://github.com/autochthe/react-console/blob/0d5d0834b2131cc86f1fa6342fe3d52130c636ad/src/react-console.tsx#L436-L450 This gets a little complicated by the fact that Ctrl+V means something very different in...

Ok, this appears to be a windows specific problem. The thing is, I'm not sure that this is going to be solved in the way that you desire because GNU...

Remapping of hotkeys is planned but as of right now it is not yet implemented.

The current plan is to eventually allow passing a map of keys to Readline functions via props. In this case you could eventually pass something like `keymap={{'C-v': null}}` to disable...