Alexey Sergushichev

For example, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81398 and https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL17791 The annotation contains ENTREZ_GENE_ID, which can be used for annotation with mapIds and org.Mm.eg.db database.

fgsea hangs with nperm=1001, but not 1000

6

``` # Runs fine, takes just a few seconds fgseaRes

See https://github.com/ctlab/fgsea/issues/126#issuecomment-2020559725

Launchkey mini MK3 support

1

Are there specific reasons why launchkey mini mk3 has this long control sequence? My understanding is that one of the messages is suddicient, namely `[159, 12, 127]` which turns DAW...

Linux support

15

Hi, nice piece of software! However, I had troubles running it on my Linux machine (Debian 12). What are you thoughts on Linux support? More precisely, here are my issues:...

Feature request: geom_mark_polygon

4

Related to: https://github.com/thomasp85/ggforce/issues/321 I have my own algorithm to calculate the border of points group, but would like to use your label location procedure. Do you think it'd be possible...

Fixes #334 Currently the extra spacing is added during the label placement. However, users can already set label padding by setting `label.margin` option, which is used when creating label bounding...

Unnecessary offset in place_labels?

1

Hi, I was trying to figure out, why I can't get more compact labeling in https://github.com/thomasp85/ggforce/issues/333, and noticed that there seem to be an unnecessary offset in `place_labels` function (https://github.com/thomasp85/ggforce/blob/main/R/mark_label.R#L70):...

feature: geom_mark_shape

2

Hi, This is an initial take on geom_mark_shape which provides an option to manually specify polygon for the mark (issue #333). There are two key changes: 1) Setting `concavity=NA` in...

Hi, label.size got deprecated recently in igraph in favor to linewidth. This PR applies the change. Example code: ```{r} library(network) library(sna) library(ggnetwork) data(flo, package = "network") n