Assaf Grunwald

similar API for pod5?

2

Hi I sthere a similar API for Pod5 files? mostly I need the subset option

Error while running entropy as in help

1

I run the following: modkit entropy --in-bam ${mod_bam} \ -o ${output_entropy_bedgraph} \ --ref ${ref} \ --threads 32 \ --log-filepath modkit_entropy.log and get the following error: > Error! invalid input options,...

Advice on Preserving Methylation Tags (ML/MN) When Switching from Minimap2 to BWA

1

Hello dear community, I am studying epigenetics in cfDNA using ONT sequencing. I have reasons to suspect that minimap2 does not handle short reads

Mutated CpG sites

1

Hello, I was wondering whether mutated cytosines at CpG sites—such as those resulting in TG dinucleotides—are included in the calculation of beta values. Specifically, if a sequencing read contains a...