intervene
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asntech
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
 As shown, the value range in the plot is not from (0,1). So is there any way to set the zMin and zMax to give the minimum and maximum...
Hey Aziz, I'm trying to install intervene from bioconda cloud, and I'm having issues with getting the latest version. I even started a new miniconda2 from scratch, and I'm still...
I use Intervene in a computational pipeline to check overlaps from multiple BED files. The command I use is: `intervene pairwise --input --compute jaccard --output ` Sometimes one of the...
This is a feature request. Can you please add a feature to generate banana-style Venn diagrams like the one in https://doi.org/10.1038/nature11241
Hi, [intervene](https://github.com/asntech/intervene) is a very nice tool. I have used this tool before for comparing a list of *.bed file. And I wonder that maybe you can also add the...
The Iterable abstract class was removed from collections in Python 3.10. Please fix imports accordingly to avoid import error. https://stackoverflow.com/questions/72032032/importerror-cannot-import-name-iterable-from-collections-in-python
Hei, I encountered an error, where plotting crashes. I run pairwise module to compute Jaccard statistic. It results in a following matrix: HUMAN_IRF4 HUMAN_IRF3 HUMAN_IRF4 1.0 0.0 HUMAN_IRF3 0.0 1.0...
Hi, I have question about values obtain from bedtools and intervene of Jaccard similarity. **Command bedtools jaccard in bash script:** ``` bedtools jaccard -a "$file1" -b "$file2" -f 1.0 -r...
Hi there, I am trying to run 'intervene upset'on 73 BED files that have ~40,000 intervals each. `intervene upset -i /data/alistairh/projects/SV_calling/data/peaks/DiscRegions/*{1,2,3}.bed --output SV_calling/data/peaks/DiscRegions/results_RT --save-overlaps` However, Intervene uses up all the...
