asmitaL99

Unable to read a whole slide image into sopa

1

## Description I am trying to use the sopa.io.wsi function to read a ome.tif file ## Reproducing the issue image = sopa.io.wsi("Xenium_V1_hPancreas_Cancer_Add_on_FFPE_he_image.ome.tif", as_image=True) ## Expected behavior A clear and concise...

Import fails with xeniumranger 3

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2024-10-02 10:35:12 [runtime] (run:local) ID.IMPORT_SEGMENTATION.XENIUM_RANGER_CS.XR_IMPORT_TRANSCRIPT_ASSIGNMENTS.fork0.join 2024-10-02 10:35:28 [runtime] (failed) ID.IMPORT_SEGMENTATION.XENIUM_RANGER_CS.XR_IMPORT_TRANSCRIPT_ASSIGNMENTS [error] Pipestance failed. Error log at: project-id/XENIUM_RANGER_CS/XR_IMPORT_TRANSCRIPT_ASSIGNMENTS/fork0/join-u354efd682e/_errors Log message: Traceback (most recent call last): File "/home/asmilags/proseg/Xen_KPMP_038/xeniumranger-xenium3.0/external/martian/adapters/python/martian_shell.py", line 648, in _main...