aslangabriel

generate_ska_alignment.py problem

2

Hi，I prepared fastq-list files as follows JSAHVC01R1 /home/work/APECSRA/JSAHVC01R1.fastq JSAHVC01R2 /home/work/APECSRA/JSAHVC01R2.fastq JSAHVC02R1 /home/work/APECSRA/JSAHVC02R1.fastq JSAHVC02R2 /home/work/APECSRA/JSAHVC02R2.fastq JSAHVC03R1 /home/work/APECSRA/JSAHVC03R1.fastq JSAHVC03R2 /home/work/APECSRA/JSAHVC03R2.fastq JSAHVC04R1 /home/work/APECSRA/JSAHVC04R1.fastq JSAHVC04R2 /home/work/APECSRA/JSAHVC04R2.fastq JSAHVC05R1 /home/work/APECSRA/JSAHVC05R1.fastq JSAHVC05R2 /home/work/APECSRA/JSAHVC05R2.fastq JSAHVC06R1 /home/work/APECSRA/JSAHVC06R1.fastq JSAHVC06R2 /home/work/APECSRA/JSAHVC06R2.fastq,...

Hi，I have 25 genome assembles available and find out the methods to prepare whole genome alignment files including mauve and parsnp. Unfornately all the output files are different from gubbin...

VFDB Parse the cluster output and tabulate the results using the specific Virulence gene DB compatible script:

3

When I run this step: the error indicated that "File "mybin/VFDB_cdhit_to_csv.py", line 68, in sys.exit(main()) File "mybin/VFDB_cdhit_to_csv.py", line 29, in main outfile = file(args.outfile,"w") NameError: name 'file' is not defined...

Hi, I compared the differences between on line and off line editions and found that on line edition didn't afford hierarchical clustering function , while the offline edition can't export...

Hi，Mr Song I work around my assembles and cutomized grouping text with your pipeline. Although everything went well at the begining, the error indicated no files detected when creating flankregion...