Anton Korobeynikov

Switch to some library (e.g. clipp) to reduce hand-generated code and simplify adding new options

Support larger GFAs

11

Large genome / metagenome could generate very huge assembly graph. We need to see how to load them properly. Few ideas straight from the head: * Switch to GFA parser...

Add Mac / Windows runners

3

So we can ensure build is not broken there

Possible path-related improvements

4

* Add support for gapped paths (e.g. from scaffolds) * Load SPAdes *.paths file directly

Документация для ssa with weights

4

Собственно, сабж. 1. Документация 2. Примеры

Mesh has a compile-time fixed max arena size of 64 GB

23

Hello I'm trying to benchmark SPAdes (https://github.com/ablab/spades) with Mesh. Currently SPAdes runs fine with both tcmalloc and jemalloc (and have embedded jemalloc for the sake of completeness). On reasonable small...

Invalid GAF is produced

1

It seems that running `gfatools ed -c` produces invalid GAF as only 10 entries are present instead of 12 mandatory per spec E.g.: ``` NA21309#1 119129 0 119129 + >s60779>s60780>s60781>s60782>s60783s60785>s60786...

Determine the set of include dependencies

1

### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above. We need to determine the set of `include`...

### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above. Document the SPAdes build process from the developer...