asl
Possible path-related improvements
- Add support for gapped paths (e.g. from scaffolds)
- Load SPAdes *.paths file directly
Path position queries: find me the node at a given path position. Given a node, what path positions is it at (or near).
On Wed, Sep 22, 2021, 06:13 Anton Korobeynikov @.***> wrote:
- Add support for gapped paths (e.g. from scaffolds)
- Load SPAdes *.paths file directly
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/asl/Bandage/issues/4, or unsubscribe https://github.com/notifications/unsubscribe-auth/AABDQEIH4E77OEVRUOGPSFTUDFJXVANCNFSM5EQKYNKA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.
@ekg Small clarification: for the second "Given a node, what path positions is it at (or near)" – you mean for a node find all paths that traverse that node and what are the position in them? How would you visualize the results?
In gfaestus we have a window that shows this. I guess you could use one of the two side bars to do this?
Btw, I really want to test, but need to do a system update to get Qt6.
On Mon, May 2, 2022, 18:21 Anton Korobeynikov @.***> wrote:
@ekg https://github.com/ekg Small clarification: for the second "Given a node, what path positions is it at (or near)" – you mean for a node find all paths that traverse that node and what are the position in them? How would you visualize the results?
— Reply to this email directly, view it on GitHub https://github.com/asl/Bandage/issues/4#issuecomment-1115088390, or unsubscribe https://github.com/notifications/unsubscribe-auth/AABDQENQO6OLE5PTLEDUV23VH76KDANCNFSM5EQKYNKA . You are receiving this because you were mentioned.Message ID: @.***>