nf-test
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Simple test framework for Nextflow pipelines
Can nf-test be configured to get [nextflow secrets](https://www.nextflow.io/docs/latest/secrets.html)? I'm getting some `NoCredentialsError` from within the test that I don't see from a nextflow cli run itself.
Hi, Please can you patch the error I'm getting when including my module via an alias to use a different set of module parameters in the module config file. basically...
Hi, When an empty file (ending with .gz) is created by a process, the following error occurs: ``` java.io.EOFException ``` This didn't happen in version 0.8.1 for reference. In the...
Hello! Would it be possible to add an option to exclude tests by tag? Essentially, the opposite functionality of `--tag`, similar to what pytest can achieve by using `not` in...
If a workflow uses a process, when that process is tested we could automatically include the subworkflow as a test. This can currently be achieved with tags (see #178) but...
Hi, Is it possible to add a feature where you use a string value as input to `.grepLinesGzip()` to make it work like the bash command `zgrep`? This will be...
Hi Team Thank you for creating an excellent framework. I was wondering if there is way to compare images across process runs. md5 based snapshot matching might fail due to...
I am attempting to test using different process defaults for some of my modules. It would be convenient if I could specify different profiles to use for testing in different...
Currently all nf-test files are created in the `tests/` folder. With a large and complicated pipeline this create a single folder of many files with similar names: `main.nf.test`, `main_workflow.nf.test`, `fastqc.nf.test`,...
Hi Team Thank you for the amazing work on nf-test. Would it be possible to add automated output matching of a test against its own `stub` version where the only...