Alexey Shiklomanov

+1 to building against 4.0.2 and 4.0.3 -- that's a great addition. > 4.0.2 => ENV CRAN=https://packagemanager.rstudio.com/all/__linux__/focal/344 > 4.0.3 => ENV CRAN=https://packagemanager.rstudio.com/all/__linux__/focal/latest My point about (3) above was basically that...

One other option (mentioned in #2779) is to use something like `renv` to control versions of _every_ package individually. That gives maximum control, but would require revisions to our build...

I would also add: - [x] Move `PEcAn.utils::fqdn()` to `PEcAn.remote` (and change all calls to `fqdn()` elsewhere in PEcAn). It probably belongs there anyway, and then we can get rid...

Necrobump! Related to recent Travis issues, a few more suggestions: - [ ] Move `convert.inputs` to `PEcAn.workflow` - [x] Move `do.conversions` to `PEcAn.workflow` #2168, #2169 - [x] Move `run.write.configs` to...

@moki1202 Yes, this issue is still open. We have hundreds of these notes that need to be addressed (e.g., for [base/utils](https://github.com/PecanProject/pecan/blob/develop/base/utils/tests/Rcheck_reference.log), [base/db](https://github.com/PecanProject/pecan/blob/develop/base/db/tests/Rcheck_reference.log), [modules/data.atmosphere](https://github.com/PecanProject/pecan/blob/develop/modules/data.atmosphere/tests/Rcheck_reference.log)). For each package, follow @dlebauer 's detailed...

@moki1202 More or less. TLDR: You'll want to do this for any variables referring to column names in `dplyr` (and similar) functions (e.g., `select`, `mutate`, `filter`, `summarize`, etc.). The root...

Thanks for your interest! Yes, this issue is still open, though we've made some progress on it -- #2773, #2774. In each PEcAn module, there is a file `tests/Rcheck_reference.log`; for...

That's a good idea. I'm​ not 100% sure how the Docker bootstrap works, but I'd be surprised if that didn't work. On May 10, 2017 4:14 PM, "Rob Kooper" wrote:...

Update: The BU cluster now has Singularity installed, so this is something we should definitely consider seriously. I tried building and running an ED image, and hit some MPI snags,...

My understanding is that Docker isn't typically available on University HPCs because it's really intrusive and requires sudo privileges, whereas Singularity is designed with HPCs in mind. I _think_ Singularity...