Guillaume Poirier-Morency

Fix issue #42 by providing the PPA under the 'vala-team' alias.

Having a `__init__.py` in benchpy folder is not a recommended practice. The package should provide a simple module at its root folder.

Address already in use

2

``` srun: error: unable to initialize step context socket: Address already in use srun: error: Unable to create step for job 2539557: Address already in use ```


Tasks that should be covered via sub-commands: - submit experiments from a gsheet - submit experiments from a file - submit individual experiment - resubmit batch information - general luigi-wrapper...

Unfulfilled dependency at runtime for SubmitExperimentBatchInfo

1

I think there's a delay between batch info submission and the batch factor appearing in the Gemma public API due to caching. A simple workaround would be to introduce a...

We don't use split spots (required for --skip-technical) and we trim adapter ourselves, so there's no need for these two options.

This will have the advantage of grouping the alignments statistics with the FASTQ quality controls in the final report.