Guillaume Poirier-Morency

icon indicating a website link https://arteymix.github.io/about icon indicating an email [email protected]

icon company The University of British Columbia icon location Vancouver icon location Bioinformatics Programmer/Analyst at @PavlidisLab

Results 354 comments of Guillaume Poirier-Morency

@Schema implementation and type are ignored when annotated at model-level

I managed to resolve this by using a custom `ModelConverter` that retrieves the original `AnnotatedType` instead of using the one inferred from the parameter: ```java public class ArgModelConverter extends ModelResolver...

Add support for bnf syntax in pygment

I agree on this!

Add minimal flatpak for Protégé

I'll do some user testing to see if I can get rid of the home filesystem permission. Te challenge with this app is that your ontology has to be saved...

Optional.get() cannot be called on an absent value

It would be nice to have an actionable error message. I think it's the case for `NullPointerException`.

Optional.get() cannot be called on an absent value

I would suggest that you wrap the calls to that downstream library with broad exception handling and convert those to a ROBOT-specific exception which can then be handled to produce...

Optional.get() cannot be called on an absent value

I haven't tried the --check flag yet as we decided to use Reactome instead. I'll test it and let you know.

MIME type

Hi, just doing a follow-up here as I need to use some media type for a data service. Is it reasonable to assume that `vnd.msgpack` will eventually be registered and...

valum leaks memory

Looks like it was missing a null-check. The memory leak was caused by an invalid hash table insertion of the negotiated charset into the `Content-Type` parameters.

valum leaks memory

I'll investigate the issue tomorrow. If you do a `valgrind --leak-check=full` and install libvsgi with debug symbols, you should have a better idea of where this is coming from. The...

valum leaks memory

@grindhold could this be in `_mark_content_as_utf8`? I'll try fix this one, but it looks like a compiler bug. ``` ==8247== Memcheck, a memory error detector ==8247== Copyright (C) 2002-2017, and...