KeyError in yield_plot and occupancy

[sshs21]

I think there may be a problem with these options for fail reads. I get KeyError: 'template' when I attempt these options for fail reads (MAP007, minKnow version 0.51.1.62, poretools version 0.5.1) I get the following error. I do not get this error for pass reads

Command: poretools_main.py yield_plot CNV_022516/reads/downloads/fail/

Error: File "/seq/sara/poretools-master/poretools/poretools_main.py", line 519, in main() File "/seq/sara/poretools-master/poretools/poretools_main.py", line 513, in main args.func(parser, args) File "/seq/sara/poretools-master/poretools/poretools_main.py", line 53, in run_subtool submodule.run(parser, args) File "/isilon/seq/sara/poretools-master/poretools/yield_plot.py", line 72, in run start_time = fast5.get_start_time() File "/isilon/seq/sara/poretools-master/poretools/Fast5File.py", line 469, in get_start_time node = self.find_event_timing_block() File "/isilon/seq/sara/poretools-master/poretools/Fast5File.py", line 439, in find_event_timing_block path = fastq_paths[self.version]['template'] % (self.group) KeyError: 'template'

Thank for your help

[arq5x]

Yep we have seen this as well. I will look into a fix asap

[alexiswl]

I've noticed this as well. It's because some of the failed files do not have any template data. A simple try, except should work in this regard. I'm working on a couple of scripts that split failed reads into folders explaining why they failed.

[skbrimer]

I too am having this problem using poretools 0.6.0

[Chjulian]

Im using poretools 0.6.0 in a MacOs sierra 10.12.1 and having the same issue when files do not have template data.