nanopore-scripts

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Error while running count_errors.py

3

Hi, I am following the workflow you have given in error-profile.sh. Everything works perfect, and I use Ecoli data set. But on error pops up while running count_errors.py . `Traceback...

athulmenon

Fix an error relating to Issue 4(1) (1) https://github.com/arq5x/nanopore-scripts/issues/4

pfaucon

Currently `count-errors.py` depends on CIGAR `=` and `X` operations, and cannot handle the older but widely used `M` operator (match or mismatch). Ideally the script could be extended to handle...

peterjc

Issue running expand-cigar.py

7

Hi, I'm following the assembly workflow for MinION data presented in [this preprint](http://biorxiv.org/content/early/2015/03/11/015552) from Nick Loman, Joshua Quick and Jared Simpson. To assess read accuracy, they use your expand-cigar.py and...

kthlnktng