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lumpyexpress: line 15: -n: command not found

Open lqsae opened this issue 5 years ago • 4 comments

lqsae avatar Feb 26 '20 10:02 lqsae

hi , when i use the soft ，i have some problem ,can you help me ?

lumpyexpress: line 15: -n: command not found The index file is older than the data file: ZTB.rmdup.bam.bai lumpyexpress: line 16: [: ==: unary operator expected

lqsae avatar Feb 26 '20 10:02 lqsae

I'm currently facing the same problem when using lumpyexpress. Any idea ?

quentinmiagoux avatar Mar 05 '20 08:03 quentinmiagoux

I'm currently facing the same problem when using lumpyexpress.

flystar233 avatar May 11 '20 10:05 flystar233

This is typically either a python issue or that your system does not have hexdump.

See https://github.com/arq5x/lumpy-sv/issues/256

I would recommend using the latest lumpy wrapper, smoove.

https://github.com/brentp/smoove

On Mon, May 11, 2020 at 4:25 AM flystar [email protected] wrote:

I'm currently facing the same problem when using lumpyexpress.

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ryanlayer avatar May 11 '20 11:05 ryanlayer