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Published 20 hours ago • verified publisher icon arq5x

DUP and DUP:TANDEM

Open arkyl opened this issue 6 years ago • 2 comments

Hi, I noticed that the lumpy vcf header included both DUP and DUP:TANDEM sv types. I am wondering if lumpy's DUP are actually just DUP:TANDEM, since PE and SR can only detect DUP:TANDEM? Thanks much.

Yue

arkyl avatar Sep 13 '18 20:09 arkyl

Hello,

I had the same question: what is the difference between DUP and DUP:TANDEM in the final VCF output? Thank you in advance for your help!

J-B

jbreynier avatar Jun 16 '21 10:06 jbreynier

Yes. DUP refers to a tandem duplication.

On Wed, Jun 16, 2021 at 4:06 AM Jean-Baptiste Reynier < @.***> wrote:

Hello,

I had the same question: what is the difference between DUP and DUP:TANDEM in the final VCF output? Thank you in advance for your help!

J-B

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ryanlayer avatar Jun 16 '21 15:06 ryanlayer