Make species the top level in hierarchy

[danielecook]

Hey this is a cool project. In the figure you show species as the top level directory but the recipes aren't following that scheme currently? I Can see advantages for both approaches, although I think organizing by species first is the worth considering because:

• there are several species specific repositories (e.g. Wormbase, flybase, etc.). This would keep those folders from cluttering up the top level directory.
• it also helps to make folks aware of what resources are available for their species of interest.

Sorry if this was already in the works!

Also what about adding a description line in the recipes which could be queried and displayed from the CLI?

[arq5x]

"Hey this is a cool project. In the figure you show species as the top level directory but the recipes aren't following that scheme currently?"

I absolutely agree. It is in the works conceptually, but I just haven't changed the cookbook ontology accordingly.

"Also what about adding a description line in the recipes which could be queried and displayed from the CLI?"

Very good idea!