gemini
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arq5x
a lightweight db framework for exploring genetic variation.
Hello, I am trying to use gemini. After installing all needed dependencies I had a successful installation. I am using a large VCF WGS file (~12GB) with ~1000 of samples...
Hello, I was trying to download gemini from* [https://gemini.readthedocs.io/en/latest/index.html?highlight=install](url) `wget https://github.com/arq5x/gemini/raw/master/gemini/scripts/gemini_install.py python gemini_install.py $tools $data PATH=$tools/bin:$data/anaconda/bin:$PATH` When I clone the test on the appropriate version, 0.30.2, I encountered two problems:...
Traceback (most recent call last): File "/home/monika_mohite/anaconda3/envs/python2/bin/gemini", line 4, in __import__('pkg_resources').run_script('gemini==0.30.2', 'gemini') File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/pkg_resources/__init__.py", line 666, in run_script self.require(requires)[0].run_script(script_name, ns) File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1462, in run_script exec(code, namespace, namespace) File...
I created a [Docker image ](https://hub.docker.com/repository/docker/jdelafon/gemini/general)for Gemini 0.30.2, based on Python 2.7 - the source is here : https://gitlab.com/jdelafon/gemini All the build script does is download the installer script and...
Hi, first of all, Gemini is a wonderful easy-to-use tool and works perfectly for my Varscan vcf 4.1 (reference is hg19). Then, I tried to load MuTect2 vcf 4.2 (reference...
Hi, I'm having an urgent issue with Galaxy GEMINI Load tool. It kept giving me following error but I've followed the tutorial to make the vcf file using SnpEff tool......
How to uninstall gemini. Is there a script for uninstalling it? It would be good to have an uninstall script as well
Hello, I keep running into this error while trying to run GEMINI, and I'm wondering if anyone has come across this before: ``` Error. nthreads cannot be larger than environment...
I'm unable to install gemini on our linux server and was hoping for some assistance. I'm using a GNU/Linux server, on which I do not have sudo permission. I first...
Hi, I just installed gemini and ran the test suite but it fails with: ``` effstring.t03...\c 0a1 > CCNL2 5_prime_UTR_variant LOW protein_coding 1 0 0 12d12 < CCNL2 5_prime_UTR_variant LOW...
