bedtools2 icon indicating copy to clipboard operation
bedtools2 copied to clipboard

Published 20 hours ago • verified publisher icon arq5x

What is the Expected Output of bedtools flank when input is VCF?

Open felixm3 opened this issue 2 years ago • 0 comments

I'm trying to get a bed file with 100 bases upstream and downstream of calls in a vcf file.

When I run bedtools flank with the vcf as input, I instead get some kind of vcf file.

image

What is the expected output?

felixm3 avatar Feb 15 '23 18:02 felixm3