immunedb

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When trees are re-generated, but no sequences are found, the tree should be set to null. https://github.com/arosenfeld/immunedb/blob/0cfc896d7cdacfa38b7a7516b7d20cce16dfa043/immunedb/trees/__init__.py#L58-L65

arosenfeld

V-ties across genes with different IMGT gapping at the allele level cause odd behavior. E.g.: ``` >IGHV4-4*04 ...CCATCAGC---------AGTA... >IGHV4-4*07 ...CCATC------------AGTA... >TIE ...CCATCNNN---------AGTA... ``` These genes should not tie at all...

arosenfeld

Create filter for CDR3 AA for clones and sequences in API.

arosenfeld

Identification should fail if metadata is missing.

arosenfeld

If baseline fails during clone_stats, the only error will be the output file is not found. It should instead display the baseline error.

arosenfeld

Mutation stats for a given region are not populated if there are no mutations in that region. It should place 0s in all mutation types.

arosenfeld

Bump gunicorn from 21.0.1 to 22.0.0

1

Bumps [gunicorn](https://github.com/benoitc/gunicorn) from 21.0.1 to 22.0.0. Release notes Sourced from gunicorn's releases. Gunicorn 22.0 has been released Gunicorn 22.0.0 has been released. This version fix the numerous security vulnerabilities. You're...

dependabot[bot]

Bump eventlet from 0.34.2 to 0.35.2

1

Bumps [eventlet](https://github.com/eventlet/eventlet) from 0.34.2 to 0.35.2. Changelog Sourced from eventlet's changelog. 0.35.2 [fix] Fix tool.setuptools/packages list eventlet/eventlet#921 [security] Dnspython 2.6.1 - Address DoS via the Tudoor mechanism (CVE-2023-29483) eventlet/eventlet#916 [doc]...

dependabot[bot]

Bump pymysql from 0.9.3 to 1.1.1

1

Bumps [pymysql](https://github.com/PyMySQL/PyMySQL) from 0.9.3 to 1.1.1. Release notes Sourced from pymysql's releases. v1.1.1 [!WARNING] This release fixes a vulnerability (CVE-2024-36039). All users are recommended to update to this version. If...

dependabot[bot]