arianccbasile

Hello! I like your source, I was wondering if you are planning to switch to python3 since python2 is now considered obsolete and many dependencies have already dropped support. Faithfully,...

MMinte with model created by Carveme

5

Good morning! I am trying to use your scripts (adapting them to python3.6) for my metabolic models created by carveme (https://github.com/cdanielmachado/carveme) instead of ModelSEED so starting from widget4. I was...

good evening! I am trying to reproduce the tutorial for interactions you posted on interactions.ipynb but I stop at > growth_rates = mminte.calculate_growth_rates(pair_model_filenames, western_diet) I get this error: > AttributeError:...

good evening! I am trying to reproduce the tutorial for interactions you posted on interactions.ipynb but I stop at > growth_rates = mminte.calculate_growth_rates(pair_model_filenames, western_diet) I get this error: > AttributeError:...

using query_missingGenes_from_module on multiple modules

3

Dear Andreas, I am trying to use your script query_missingGenes_from_module to spot missing genes from module but I need to do it recursively on multiple modules (a list provided) and...