ardy20
ardy20
Hello I am trying to push results of Interproscan (tsv) and diamondp (protein) search (like blastp) into my braker.gtf file (from Braker2 structural annotation). The main reason is completing functional...
Omni-C
Hello We have done a phased assembly using HiFi data and Improved Phased Assembly (IPA) on a polyploid plant. Then, we did a Omni-C (Dovetail) for the same plant and...
Hi At plotting stage, it is not clear how the chrn.list can be prepared, especially the length of each group. Could you please explain a bit more?
Hello Could you please help me to run your pipeline? I only have one gene that I would like to find its orthologs in 136 sequenced plant genomes. Do I...
Do you recommend conda installation? Does conda setup the mySQL required for OrthoMCL as well?
Hello I installed WGD for whole genome duplication analysis. I run the bokeh and the viz command as following but I get error when I run on your example data...
Dear Developer Could you please check the singularity image? I run a test but it failed. Regards
Could you please explain how to prepare metadata file and which tool is suggested for soft masking of the genome?
Dear Developer I am interested to try your pipeline. Could you please add information how to install your pipeline via Conda? Regards
Hello Can we use BAM or BED files for the visualisation of the Hic contacts maps? Any command example?