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Published 20 hours ago • verified publisher icon tangerzhang

Plotting stage

Open ardy20 opened this issue 3 years ago • 1 comments

Hi At plotting stage, it is not clear how the chrn.list can be prepared, especially the length of each group. Could you please explain a bit more?

ardy20 avatar Mar 08 '21 06:03 ardy20

After ALLHiC_build stage, you will get an assembled fasta file named "groups.asm.fasta", and you need calculate the length of each sequence, then write them into chrn.list with the chromosomes which you want plot.

The format of chrn.list is like: group1 10000000 group2 9000000

sc-zhang avatar Mar 08 '21 10:03 sc-zhang