Aravinda Munasinghe

Hi, Is there a way to "partially" fold a structure? For example, sequence A is 500 AAs and I know the structure of the sequence from residue ID 250-350. Is...

Different databases within uniclust30

1

Hi, First apologies if I am posting this in the wrong place. May I know what are the differences between "UniRef30_2022_02_a3m.ffdata", "UniRef30_2022_02_hhm.ffdata", and "UniRef30_2022_02_cs219.ffdata"? Which file should I be using...

Type Error with af2_interface_metrics.py

3

Hi, First of all, I am really not that familiar with Jax. My conda environment was built with distributed yml file and thus got the Jax 0.3.24 as shown below....

Information on split_folder command

2

Hi, May I know from which library the split_folder command comes from? I couldnt find it in the silent_tools. I am referring to the split_folder('output/20220104_sh3_r2/trf_relax/', batch_size=50, trb_dir='../..') command in following...

missing compile_metrics.py file

2

Hi, Was trying to reproduce the data using Tutorial: Hallucinating PD-L1 binder. But I think the compile_metrics.py is missing in the scripts folder.