Arang Rhie

Use `meryl histogram ref.meryl > ref.hist`, and plug that hist in genomescope.

Hello, The doc you are referencing is very old. Type meryl and see the help message. In your example, counting kmers with: ``` meryl count k=21 file_name.fasta output file_name.meryl ```

Yes, this is the expected meryl db output. It is a 'directory'. Just type `meryl` and read the help message. If anything is unclear, let us know.

Hello, the meryl version used in the trio binning paper is a bit outdated. The equivalent parameters with `meryl1.0` release ~ recent version on the master is: ``` meryl difference...

Hello @SHuang-Broad, yes, the easiest way I'd recommend is to run canu with `-haplotype` option. This will stop after obtaining the binned reads of the child. If you are interested...

There was a bug affecting a few k-mers when generating the k-mer counts, in some edge cases in the 1.8 release that got fixed. I'd also vote for cheating the...

Hello, try `meryl statistics 2.meryl | head` and see if that gives a reasonable kmer count summary. It seems like 2.meryl is an invalid kmer db.