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How do you plot?

Open Axze-rgb opened this issue 11 months ago • 3 comments

Hello, I did this

meryl count k=17 m64072_200915_142348.Q20.fastq.gz output ref.meryl

there must be a script to plot it right? Could you tell me which one? Thanks a lot

EDIT: to be clear I would like to get the same result as with jellyfish when we passed it to genomescope. Is it possible?

Thanks

Axze-rgb avatar Mar 23 '24 18:03 Axze-rgb

Use meryl histogram ref.meryl > ref.hist, and plug that hist in genomescope.

arangrhie avatar Mar 23 '24 19:03 arangrhie

awesome

Axze-rgb avatar Mar 23 '24 19:03 Axze-rgb

Genomsscope is not happy

File was uploaded but it has 1 column(s). The file must have 2 columns separated by a single space, which is the default in Jellyfish

Axze-rgb avatar Mar 23 '24 19:03 Axze-rgb