Arang Rhie

One last thing: add `-z *.only.hist` for the 0-count histogram (assembly only error kmers). There should be an associated *.only.hist to your spectra-cn.hist. This will make the complete spectra-cn plot....

Reopening to remind myself to add documentation

Hello @aureliendejode , I think there should be a way to convert your arrow's .gff to .vcf. Let me take a look at this. Feel free to share your .gff...

Hello @yao-chenxin , sorry for the very delayed reply. Yes, you could use GATK or DeepVariant. Up to you. I assume the assembly wasn't generated from Illumina reads though? Best,...

@brianwalenz could you take a look?

Hello, please see the conversation in https://github.com/arangrhie/T2T-Polish/issues/4. Let me know if you still have the same issue after switching the branch. Arang

Hi @lsaeric , we have a [cytoband annotation](https://s3-us-west-2.amazonaws.com/human-pangenomics/T2T/CHM13/assemblies/annotation/chm13v2.0_cytobands_allchrs.bed). Is this what you are looking for?

Sorry, then I am not aware of it..! Do you have the genetic map for hg38? I could try lift that over to CHM13 if that'll be useful.

Yes I am not aware of any genetic map for T2T-CHM13. >Additionaly, the best approach to get the resource now is to liftover GRCh38 data to T2T-CHM13 coordinates? I believe...

Hello, I am not sure if I understood your question. Are you looking for a parameter that retrieves where a specific kmer is located in a read? If this is...