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Published 20 hours ago • verified publisher icon arangrhie

Polish_genome

Open yao-chenxin opened this issue 2 years ago • 1 comments

Hi, author: I want to polish the assembled genome and then get consensus FASTA, using Merfin. I now have FastA files and Illumina Reads FastQ files; How do I get a VCF file？Is it possible to use GATK to map FASTQ reads to the self-assembled genome FASTA? Look forward to hearing from you, thanks！ With best wishes.

yao-chenxin avatar Aug 08 '22 06:08 yao-chenxin

Hello @yao-chenxin , sorry for the very delayed reply. Yes, you could use GATK or DeepVariant. Up to you. I assume the assembly wasn't generated from Illumina reads though?

Best, Arang

arangrhie avatar Oct 18 '22 20:10 arangrhie