Arun Ahuja

Perhaps related, but after the redeployment and submitting a run I see: ``` File "/home/cycledash/cycledash/venv/lib/python2.7/site-packages/requests/adapters.py", line 375, in send raise ConnectionError(e, request=request) ConnectionError: HTTPConnectionPool(host='demeter.hpc.mssm.edu', port=14000): Max retries exceeded with url:...

Some near-term ways to address this might be: - allow an RNA BAM to be specified on run submission - allow a third BAM (the RNA BAM) to be displayed...

Yes, you can submit any number of BAMs, but you can't submit a run with multiple tumor BAMs:  But assuming the "multiple BAMs in a pileup" feature allows you...

Also "true positive" issue caught in the act

The gene_names were there before I refreshed to the latest deploy, this was submitted before the update.

So I did have them in the new deploy in another tab, refreshed that tab and now they are gone.

And now back: 

...and now gone: http://cycledash.demeter.hpc.mssm.edu/runs/327/examine?query=sample_name+%3D+TUMOR+ORDER+BY+contig%2C+position

Verifying I'm not crazy:  

On this IGV also allows you to jump to a gene: