Arun Ahuja

Also, a fan of the latter. Tried this in #433 but ran into some dependency issues (run time class not found errors),but I think I had just needed Spark compiled...

@ryan-williams Have you given this a shot? I tried just changing the config and an error I got was ``` Error:(132, 47) diverging implicit expansion for type org.hammerlab.guacamole.reference.Position => Comparable[org.hammerlab.guacamole.reference.Position]...

Thanks @jstjohn - in the short term, we should probably have a better error message at least

Right now we are stalled on upgrading Hadoop-BAM due to the switch to Java 8, but if we agree upon that we should be able update Hadoop-BAM and have this...

Hi @ankushreddy This error occurs when a variant is called that is deletion or insertion and reference or alternate is an empty string. Was this error from the `germline-threshold` caller...

OK, I have no strong feelings on SBT either, other than it was difficult to find a coveralls tool to work with maven for #244. Mostly, I was just thinking...

Hi @ankushreddy - thanks for checking out Guacamole. Most of the callers are still in progress, but hopefully we can help you test them out. For `germline-threshold`, there is also...

What version of ADAM are you using, if you have moved to a new version of ADAM the schema of the ADAM format may be different. If you can use...

Hi @ankushreddy Can you tell us more about the error you hit using a BAM file. As we mentioned earlier if the ADAM format is different than that support we...

@ankushreddy We actually now **only** support loading the reference explicitly and do not rely on md-tags anymore. Also, we aren't really supporting `germline-threshold` if that is what you are using,...