SOAPdenovo2
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cannot open *.kmerFreq file after pregraph, then exit
My command:
SOAPdenovo-63mer all -s config_file -K 31 -R -o soapdenovo_asm 1>ass.log 2>ass.err
config_file:
max_rd_len=100 [LIB] avg_ins=200reverse_seq=0 asm_flags=3 rd_len_cutoff=100 rank=1 pair_num_cutoff=3 map_len=32 q1=/mnt/hgfs/ubt22share/2.HQdata1/data/CDC012_R1.fq.gz q2=/mnt/hgfs/ubt22share/2.HQdata1/data/CDC012_R2.fq.gz