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Question : Any plans to support apple silicon Mac M1/M2/M3 ?

2

Hi, Everything is in the title ^^ More specifically, I am wondering if there is a way to run openfold on a macbook pro M3 or if support for apple...

DomML

Build openfold with newer ppytorch + cuda

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Right now openfold asks for old pytorch + cuda (11.2), thus latest linux is not able to build openfold. Would like to upgrade the supported pytorch + cuda and other...

chunhui-shi

Unable to load openfold packages

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Collecting openfold Using cached openfold-0.0.1.tar.gz (164 kB) error: subprocess-exited-with-error × python setup.py egg_info did not run successfully. │ exit code: 1 ╰─> See above for output. note: This error originates...

Lucie02Rose

Timeline for Multimer Training

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Hi, I wanted to express my excitement about the team's plans to release the training code for OpenFold-Multimer (press report [here](https://www.businesswire.com/news/home/20240219658831/en/OpenFold-Biotech-AI-Research-Consortium-releases-SoloSeq-and-Multimer-an-integrated-protein-Large-Language-Model-with-3D-structure-generation)). It's really fantastic to see such progress! I found...

jozhang97

I have a question regarding the number of recycling iterations used during training. In the AF2 paper they mention that the number of recycling iterations are a "shared value across...

pujaltes

The coordinates of Amino acids are calculated incorrectly after train and using *ckpt in run_pretrained_openfold.py

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Hello! Explain me please, how can I use` *.ckpt ` files after train OpenFold for the prediction by `run_pretrained_openfold.py`? Or perhaps I need to somehow convert this to another format...

vetmax7

Unexpected key(s) in state_dict: "aux_heads.tm.linear.weight", "aux_heads.tm.linear.bias"

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I am trying to run inference using OpenFold and I found that finetining_ptm_2.pt was missing in openfold/resources/openfold_params. I found a similar file on [hugging faces ](https://huggingface.co/nz/OpenFold/blob/1c97ae6b3b5482adac17888bbf1d547f81f8a888/README.md) and used their file....

srayan00

RuntimeError: The current installed version of g++ (4.8.5) is less than the minimum required version by CUDA 11.2 (5.0.0). Please make sure to use an adequate version of g++ (>=5.0.0, <=10.0.0).

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File "setup.py", line 130, in 'Programming Language :: Python :: 3.7,' File "/home/panjie/projects/tools/openfold/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/setuptools/__init__.py", line 153, in setup return distutils.core.setup(**attrs) File "/home/panjie/projects/tools/openfold/lib/conda/envs/openfold_venv/lib/python3.7/distutils/core.py", line 148, in setup dist.run_commands() File "/home/panjie/projects/tools/openfold/lib/conda/envs/openfold_venv/lib/python3.7/distutils/dist.py", line 966,...

jiepan1

Add use_custom_templates option

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## Introduction & motiviation Dear OpenFold team, Thank you very much for creating such a useful tool and give the community the opportunity to use, ablate and extend the implementation!...

rostro36

Command throw errors in scripts/flatten_roda.sh

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I downloaded the roda `pdb` subdir, with the following command ```bash aws s3 cp --no-sign-request 's3://openfold/pdb' ./pdb --recursive ``` Then, following the readme, I ran the `scripts/flatten_roda.sh` and it keep...

Minys233