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RuntimeError: attn_softmax_inplace_forward_ not implemented on CPU

6

Hi, I encountered this error while running inference. modelling for Base185 INFO:/data1/hanwei/openfold/openfold/utils/script_utils.py:Successfully loaded JAX parameters at openfold/resources/params/params_model_1.npz... INFO:run_pretrained_openfold.py:Using precomputed alignments for Base185 at /data1/hanwei/openfold/20230314_base_modelling/outputs/alignments... INFO:/data1/hanwei/openfold/openfold/utils/script_utils.py:Running inference for Base185... Traceback (most...

ToHanwei

Upgrade DeepSpeed version?

4

Hi Gustaf, Is there any potential trouble to use the latest DeepSpeed with Openfold? I might need some new features from deepspeed. Thanks, Bo

bozhang-hpc

I got " ERROR: No supported gcc/g++ host compiler found. Use 'nvcc -ccbin ' to specify a host compiler. error: command '/usr/bin/nvcc' failed with exit status 1" when running setup.py....

xianruizhong

empyriumz

error when running python setup.py install

1

when I ran “python setup.py install ”, I got following error: RuntimeError: The detected CUDA version (10.2) mismatches the version that was used to compile PyTorch (11.3). Please make sure...

d-mz

Unable to downgrade g++

1

I am facing this error trying to install OpenFold launching setup.py ``` /usr/include/c++/11/bits/std_function.h:435:145: error: parameter packs not expanded with ‘...’: 435 | function(_Functor&& __f) | ^ /usr/include/c++/11/bits/std_function.h:435:145: note: ‘_ArgTypes’ /usr/include/c++/11/bits/std_function.h:530:146:...

GiammaFer75

Compatibility issues between versions of packages/libraries while running ESMFold

1

I am trying to run ESMFold on Colab using the instructions on their repository: [Installation Instructions](https://github.com/facebookresearch/esm#quickstart), and [ESMFold structure prediction](https://github.com/facebookresearch/esm#esmfold). However, I keep running into compatibility issues, for example, between...

sid-betalol

Improve comments, especially for TriangleAttention: c_hidden is the per-head hidden dimension, not overall hidden dimension.

kfeng123

Support latest version of Lightning

2

Lightning 2.0 is rolling out soon (mid march) and comes with PyTorch 2.0 support and other significant simplifications and UX improvements. I have been working on converting the OpenFold code...

awaelchli

I'm trying to use `openfold.utils.loss.violation_loss` and expecting a scalar as an output, but for the input I'm using I get a vector (matching the batch dimension size). The reason I...

exs-hkenlay