Alberto Perez-Posada

ananse influence dropping factors with negative logFC

1

Hi, When looking at the results of calculating ananse influence over two networks, we (in the lab) have noticed that none of the factors in the output have a negative...

ananse network Out Of Memory (OOM) error and killed

31

Hi, I am trying to run ananse (pip virtual environment; last updated yesterday) on a 64thread / 110G RAM machine. While ananse binding runs fine, ananse network progresses up to...

gimme motif2factors: No Orthologs Found for any factor in my custom organism genome

6

Hi! I hope all is going good! I am trying to run gimme motif2factors (v0.17.1, installed through conda/mamba) on the genome of my organism to be able to run ANANSE....

Provide background peaks file as .bed instead of FASTA?

1

Hello, I am writing an issue of 'other' type as I am not sure where to ask. I am trying to run gimme motifs with a custom, non-genomepy genome and...