myVCF: web-based platform for NGS data analysis management

Welcome to myVCF project page.

What is this repository for?

myVCF is a user-friendly platform that helps end-users, without programming skills, to analyze and visualize mutations data to guide strategies for further downstream analysis.

Do you want to try with your own data?

Download the myVCF package or clone the Github project - http://github.com/apietrelli/myVCF/

How do I get set up?

Quick start-up with GUI

• Open myVCF directory

• Double-Click to open myVCF GUI

  • myVCF_GUI.py for Windows
  • myVCF_launcher for MAC and Linux

• Install the packages necessary to run the application by clicking on "Install Packages"

• Click on "Run myVCF" from the GUI menu

• It will open a browser with myVCF homepage!

Quick start-up on Terminal

# Clone myVCF GitHub project
git clone https://github.com/apietrelli/myVCF.git

# Enter into myVCF directory
cd myVCF

# Run the server
python manage.py runserver

> Performing system checks...
> System check identified no issues (0 silenced).
> December 05, 2016 - 17:30:09
> Django version 1.8.4, using settings 'myVCF_django.settings'
> Starting development server at http://127.0.0.1:8000/
> Quit the server with CONTROL-C.

Open the internet browser and go to http://localhost:8000/

Where I can find the documentation?

You will find further instructions for installation and setup at http://myvcf.readthedocs.io/

Who do I talk to?

• Alessandro Pietrelli [email protected]

License

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.