eds-scikit
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aphp
eds-scikit is a Python library providing tools to process and analyse OMOP data
## Description [pyarrow patch](https://github.com/aphp/eds-scikit/pull/52) in last release fails when it is run by spark executor. This PR fix this issue by specifying the python path the executor must look for...
## Description Add Altair visualization tools for any OMOP table in the model of the [Biology](https://github.com/aphp/eds-scikit/pull/51) module. ## Checklist - [ ] If this PR is a bug fix, the...
## Description `eds_scikit.period.stays.merge_visits` function outputs non-deterministic results due to koalas `sort_values(...).first()` not working as expected. We add the `sort_values_first_koalas` function for replacement. ## Checklist - [ ] If this PR...
## Description ## Checklist - [ ] If this PR is a bug fix, the bug is documented in the test suite. - [ ] Changes were documented in the...
## Description When the documentation is updated in a PR, triggers the documentation build CI ## Checklist - [ ] If this PR is a bug fix, the bug is...
## Description - Support for Python 3.7 to 3.10 (3.11 or higher is not tested) - Support for pyspark 3 (to force install pyspark 2 & koalas in python 3.7,...
## Description The `to_koalas` argument has been deprecated in `_read_table` since it wasn't used. Returning koalas DataFrame during this step allows for more predictable behavior and fewer worries due to...
When running codes from [A gentle demo](https://aphp.github.io/eds-scikit/latest/functionalities/generic/introduction/) section in documentation, some commands return errors (probably originating from small syntax changes) using version 0.1.6. ## Description 1. In section section "Extracting...
## Description Modification of `HiveData` to accept user-defined dicts of columns / tables to load because some OMOP extractions can be quite large, and users might not want to load...
