Andrew O'Reilly-Nugent

In [this Dockerfile](https://github.com/moja-global/FLINT.Cloud/blob/gcbm-container/rest_api_gcbm/Dockerfile) I updated the FLINT dependencies from those given in the `FLINT` Dockerfiles: [FLINT base Dockerfile](https://github.com/moja-global/FLINT/blob/develop/Docker/Dockerfile.base.ubuntu.18.04) | Dependency | old version | new version | | ----- |...

Fix tables in Module wiki

11

**What does the current documentation state?** The module wiki has tables that are not formatted correctly. **Where is this stated?** https://github.com/moja-global/FLINT/wiki/3.4-Module-Science **Why do you want to improve the statement?** Fix...

Added draft CHANGELOG

2

This is an early attempt at documenting the FLINT releases. Everything is open for comment, please feel free to change, discuss or tell me I'm barking up the wrong tree....

### What is the current documentation state? Examples of FLINT analysis typically come with pre-processed input data, but don't necessarily describe how to generate the necessary data inputs or how...

Rename repo 'docs.moja.global'

3

I'd like to return to our standard naming conventions and use `.` instead of `-`. This also reflects the `docs.moja.global` URL, but might require some config changes on ReadTheDocs?

Potential slow use of `std::pow` in libm

1

As part of investigating #346 - @devmitch demonstrated how to profile an R session using AMDuProf on machines running AMD CPUs. Notably, 40% of the `run_plant_benchmarks` takes place in the...

`.data` deprecated in tidyselect 1.2.0

2

I receive various messages like this when running tests. I plan to address this by removing `.data` and will likely make this change on the `fitness` branch if no-one objects....

I discovered some unexpected behaviour in `interpolate_to_heights`. When using a coarse grid, individuals in the the largest class are removed, where instead I expected to keep them. It's not quite...

[Access strategy functions] Change Strategy type to expose and access strategy functions

1

Recent changes have motivated a switch in the Strategy type that we expose in R. Currently, RcppR6 generates a Strategy as a simple list object, which is lightweight, but does...

In `expand_parameters` we repetitively specify that `mutant = FALSE`. where mutants have no effect on other plants in the community (i.e. have zero density). Changing the default setting from `TRUE...